STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097333Cyclic nucleotide gated channel subunit alpha 3a. (671 aa)    
Predicted Functional Partners:
LOC107084291
Si:dkey-44k1.5.
  
0.757
cngb1
Cyclic nucleotide gated channel beta 1a.
  
0.757
LOC107097674
Cyclic nucleotide gated channel beta 3, tandem duplicate 2.
  
0.733
LOC107097677
Cyclic nucleotide gated channel beta 3, tandem duplicate 1.
  
0.733
guca1a
Guanylate cyclase activator 1A.
   
 
 0.579
guca1b
Guanylate cyclase activator 1B.
   
 
 0.576
LOC107089009
Recoverin 3.
   
 
 0.564
pde6g
Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.
   
 
 0.528
LOC107087481
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
 
 0.523
LOC107082200
Recoverin 2.
   
 
 0.490
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.