Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
ENSCVAP00000001136Integrase catalytic domain-containing protein. (344 aa)    
Predicted Functional Partners:
ints1
Integrator complex subunit 1.
    
 0.491
ints9
Integrator complex subunit 9.
    
 0.490
ints11
Integrator complex subunit 11.
    
 0.488
ints4
Integrator complex subunit 4.
    
 0.462
ints13
Integrator complex subunit 13.
    
 0.452
ints10
Integrator complex subunit 10.
    
 0.450
ints3
Integrator complex subunit 3.
    
 0.448
ints7
Integrator complex subunit 7.
    
 0.448
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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