atp10a protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

atp10a

Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1485 aa)

Predicted Functional Partners:

cog4

0.537

LOC107101491

0.476

LOC107098997

0.476

LOC107090098

0.476

scly

0.474

LOC107084698

0.471

LOC107088245

0.470

slco2a1

0.468

ENSCVAP00000009089

0.462

ccdc103

0.427

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000009089	atp10a	ENSCVAP00000009089	ENSCVAP00000001137	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.462
LOC107084698	atp10a	ENSCVAP00000012236	ENSCVAP00000001137	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.471
LOC107088245	atp10a	ENSCVAP00000003362	ENSCVAP00000001137	Uncharacterized protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.470
LOC107090098	LOC107098997	ENSCVAP00000032856	ENSCVAP00000024878	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.903
LOC107090098	LOC107101491	ENSCVAP00000032856	ENSCVAP00000005101	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.903
LOC107090098	atp10a	ENSCVAP00000032856	ENSCVAP00000001137	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.476
LOC107098997	LOC107090098	ENSCVAP00000024878	ENSCVAP00000032856	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.903
LOC107098997	LOC107101491	ENSCVAP00000024878	ENSCVAP00000005101	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.901
LOC107098997	atp10a	ENSCVAP00000024878	ENSCVAP00000001137	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.476
LOC107101491	LOC107090098	ENSCVAP00000005101	ENSCVAP00000032856	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.903
LOC107101491	LOC107098997	ENSCVAP00000005101	ENSCVAP00000024878	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.901
LOC107101491	atp10a	ENSCVAP00000005101	ENSCVAP00000001137	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.476
atp10a	ENSCVAP00000009089	ENSCVAP00000001137	ENSCVAP00000009089	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	0.462
atp10a	LOC107084698	ENSCVAP00000001137	ENSCVAP00000012236	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.471
atp10a	LOC107088245	ENSCVAP00000001137	ENSCVAP00000003362	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.470
atp10a	LOC107090098	ENSCVAP00000001137	ENSCVAP00000032856	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.476
atp10a	LOC107098997	ENSCVAP00000001137	ENSCVAP00000024878	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.476
atp10a	LOC107101491	ENSCVAP00000001137	ENSCVAP00000005101	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.476
atp10a	ccdc103	ENSCVAP00000001137	ENSCVAP00000001039	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Dynein_attach_N domain-containing protein.	0.427
atp10a	cog4	ENSCVAP00000001137	ENSCVAP00000004355	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Component of oligomeric golgi complex 4.	0.537