STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fignFidgetin; Belongs to the AAA ATPase family. (751 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.958
ist1
IST1 factor associated with ESCRT-III.
    
 0.833
chmp3
Charged multivesicular body protein 3.
   
 0.791
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.744
yod1
YOD1 deubiquitinase.
   
 0.717
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.702
faap100
Uncharacterized protein.
   
 0.702
ubxn1
UBX domain protein 1.
   
 0.683
LOC107087272
Potassium channel, voltage gated eag related subfamily H, member 7.
      
 0.662
atg4c
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
      
 0.661
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.