STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001149Hist_deacetyl domain-containing protein. (423 aa)    
Predicted Functional Partners:
cttn
Cortactin.
    
 0.764
LOC107095911
Hematopoietic cell-specific Lyn substrate 1.
    
 0.742
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.728
Arid4a
Tudor domain-containing protein.
    
 0.728
sirt1
Sirtuin 1.
    
 0.726
wdr90
WD repeat domain 90.
    
 0.712
sirt2
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase.
    
 0.710
ranbp2
RAN binding protein 2.
   
 0.701
LOC107094393
Zgc:136908; Belongs to the AAA ATPase family.
  
 0.692
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
  
 0.692
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.