STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001149Hist_deacetyl domain-containing protein. (423 aa)    
Predicted Functional Partners:
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.841
Arid4a
Tudor domain-containing protein.
    
 0.841
rbbp4
Retinoblastoma binding protein 4.
   
 0.728
wdr73
WD repeat domain 73.
   
 0.714
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.654
ranbp2
RAN binding protein 2.
   
 0.624
sin3a
SIN3 transcription regulator family member Aa.
   
 0.622
LOC107095362
SIN3 transcription regulator family member Ab.
   
 0.622
sin3b
SIN3 transcription regulator family member B.
   
 0.622
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.610
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.