Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107099607LHFPL tetraspan subfamily member 4b. (257 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
      
 0.673
slc16a5
Solute carrier family 16 member 5a.
      
 0.632
scel
LIM zinc-binding domain-containing protein.
      
 0.544
dner
Delta/notch-like EGF repeat containing.
     
 0.490
LOC107086381
Uncharacterized protein; Belongs to the peptidase S1 family.
      
 0.470
ENSCVAP00000028268
CD109 molecule.
     
 0.420
ENSCVAP00000030538
Uncharacterized protein.
     
 0.420
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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