STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098571LIM homeobox transcription factor 1, alpha. (332 aa)    
Predicted Functional Partners:
msx1
Muscle segment homeobox 1a.
    
 
 0.569
DMRTA1
DMRT like family A1.
   
 
 0.535
nr4a2
Nuclear receptor subfamily 4, group A, member 2b.
      
 0.503
ldb2
LIM domain binding 2a.
    
 0.481
ENSCVAP00000011588
LIM domain binding 2a.
    
 0.481
LOC107090769
LIM-domain binding 1b.
    
 0.481
ldb1
LIM domain binding 1a.
    
 0.476
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.