STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098571LIM homeobox transcription factor 1, alpha. (332 aa)    
Predicted Functional Partners:
ldb2
LIM domain binding 2a.
    
 0.619
ENSCVAP00000011588
LIM domain binding 2a.
    
 0.619
LOC107090769
LIM-domain binding 1b.
    
 0.619
idi1
Isopentenyl-diphosphate delta isomerase 1.
    
   0.589
ldb1
LIM domain binding 1a.
    
 0.537
LOC107087514
T-box transcription factor 20.
    
 0.521
ENSCVAP00000015893
NDK domain-containing protein.
    
   0.515
LOC107098566
Uncharacterized protein.
    
   0.514
mab21l1
Mab-21-like 1.
    
 
 0.489
mab21l2
Mab-21-like 2.
    
 
 0.489
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.