STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107087279Muscleblind-like splicing regulator 1. (383 aa)    
Predicted Functional Partners:
tardbp
TAR DNA binding protein, like.
   
 
 0.687
LOC107089340
TAR DNA binding protein.
   
 
 0.687
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
  
 0.675
gipc1
GIPC PDZ domain containing family, member 1.
      
 0.669
pink1
PTEN induced kinase 1.
      
 0.669
lrp12
Low density lipoprotein receptor-related protein 12.
      
 0.669
sf3b3
Splicing factor 3b, subunit 3.
   
  
 0.550
SACM1L
SAC1 like phosphatidylinositide phosphatase.
      
 0.550
dph1
2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.
      
 0.489
ybx1
Y box binding protein 1.
      
 0.489
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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