Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dda1DET1 and DDB1 associated 1. (111 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 0.992
ddb2
Damage-specific DNA binding protein 2.
    
 0.989
ambra1
Autophagy/beclin-1 regulator 1b.
    
 0.982
dcaf5
Ddb1 and cul4 associated factor 5.
    
  0.978
dcaf11
DDB1- and CUL4-associated factor 11; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; Belongs to the WD repeat LEC14B family.
    
  0.974
dcaf8
DDB1 and CUL4 associated factor 8.
    
 0.964
ercc8
Excision repair cross-complementation group 8.
    
  0.963
LOC107093182
LisH domain-containing protein.
    
 0.957
DCAF1
DDB1 and CUL4 associated factor 1.
    
 0.957
cul4b
Cullin 4B; Belongs to the cullin family.
    
 0.956
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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