Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095814Ankyrin repeat and SOCS box containing 5a. (332 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.836
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.766
cul5
Cullin 5; Belongs to the cullin family.
    
 0.766
ELOB
Elongin B.
    
 0.711
LOC107084765
Elongin B.
    
 0.711
neurl2
Neuralized E3 ubiquitin protein ligase 2.
    
 0.669
LOC107084175
Uncharacterized protein.
   
 0.627
hif1an
Hypoxia inducible factor 1 subunit alpha inhibitor.
    
 
 0.625
lrrc20
Leucine rich repeat containing 20.
    
 0.622
Asb6
ANK_REP_REGION domain-containing protein.
    
 0.622
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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