Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rfx5Regulatory factor X, 5. (708 aa)    
Predicted Functional Partners:
rfxank
Regulatory factor X-associated ankyrin-containing protein.
    
 
 0.995
rfxap
Regulatory factor X-associated protein.
    
 
 0.994
ENSCVAP00000016067
Class II, major histocompatibility complex, transactivator.
    
 
 0.989
RFX7
Regulatory factor X7.
    
 
 0.928
ankra2
Ankyrin repeat, family A (RFXANK-like), 2.
    
 
 0.789
med23
Mediator complex subunit 23.
      
 0.733
ehf
Ets homologous factor.
      
 0.707
LOC107098912
Ras responsive element binding protein 1a.
    
 
 0.660
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
      
 0.646
LOC107082226
Ig-like domain-containing protein.
    
 
 0.629
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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