STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubr4Ubiquitin protein ligase E3 component n-recognin 4. (5145 aa)    
Predicted Functional Partners:
LOC107085287
ZZ-type domain-containing protein.
    
 
 0.823
kcmf1
Potassium channel modulatory factor 1.
    
 
 0.823
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.698
ENSCVAP00000019133
HECT domain-containing protein.
   
 
 0.625
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
   
 
 0.625
eprs1
Glutamyl-prolyl-tRNA synthetase.
      
 0.608
emc1
ER membrane protein complex subunit 1.
 
    
 0.607
uba5
Ubiquitin-like modifier activating enzyme 5.
   
 
 0.598
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
 
 0.598
ATE1
Arginyl-tRNA--protein transferase 1; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.
      
 0.592
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.