LOC107105040 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107105040

Uncharacterized protein. (663 aa)

Predicted Functional Partners:

fau

0.716

ranbp2

0.554

imp3

0.539

rps9

0.490

imp4

0.445

asf1b

0.434

LOC107100137

0.434

LOC107085594

0.425

rps15

0.407

actl6a

0.403

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107085594	LOC107105040	ENSCVAP00000022517	ENSCVAP00000001222	Uncharacterized protein.	Uncharacterized protein.	0.425
LOC107100137	LOC107105040	ENSCVAP00000007024	ENSCVAP00000001222	Anti-silencing function 1Ba histone chaperone.	Uncharacterized protein.	0.434
LOC107105040	LOC107085594	ENSCVAP00000001222	ENSCVAP00000022517	Uncharacterized protein.	Uncharacterized protein.	0.425
LOC107105040	LOC107100137	ENSCVAP00000001222	ENSCVAP00000007024	Uncharacterized protein.	Anti-silencing function 1Ba histone chaperone.	0.434
LOC107105040	actl6a	ENSCVAP00000001222	ENSCVAP00000023955	Uncharacterized protein.	Actin-like 6A; Belongs to the actin family.	0.403
LOC107105040	asf1b	ENSCVAP00000001222	ENSCVAP00000006506	Uncharacterized protein.	Anti-silencing function 1B histone chaperone.	0.434
LOC107105040	fau	ENSCVAP00000001222	ENSCVAP00000028499	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.716
LOC107105040	imp3	ENSCVAP00000001222	ENSCVAP00000030744	Uncharacterized protein.	IMP U3 small nucleolar ribonucleoprotein 3.	0.539
LOC107105040	imp4	ENSCVAP00000001222	ENSCVAP00000026332	Uncharacterized protein.	IMP U3 small nucleolar ribonucleoprotein 4.	0.445
LOC107105040	ranbp2	ENSCVAP00000001222	ENSCVAP00000013540	Uncharacterized protein.	RAN binding protein 2.	0.554
LOC107105040	rps15	ENSCVAP00000001222	ENSCVAP00000029881	Uncharacterized protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.407
LOC107105040	rps9	ENSCVAP00000001222	ENSCVAP00000006455	Uncharacterized protein.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.490
actl6a	LOC107105040	ENSCVAP00000023955	ENSCVAP00000001222	Actin-like 6A; Belongs to the actin family.	Uncharacterized protein.	0.403
asf1b	LOC107105040	ENSCVAP00000006506	ENSCVAP00000001222	Anti-silencing function 1B histone chaperone.	Uncharacterized protein.	0.434
fau	LOC107105040	ENSCVAP00000028499	ENSCVAP00000001222	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.716
fau	imp3	ENSCVAP00000028499	ENSCVAP00000030744	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	IMP U3 small nucleolar ribonucleoprotein 3.	0.994
fau	ranbp2	ENSCVAP00000028499	ENSCVAP00000013540	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	RAN binding protein 2.	0.420
fau	rps15	ENSCVAP00000028499	ENSCVAP00000029881	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
fau	rps9	ENSCVAP00000028499	ENSCVAP00000006455	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
imp3	LOC107105040	ENSCVAP00000030744	ENSCVAP00000001222	IMP U3 small nucleolar ribonucleoprotein 3.	Uncharacterized protein.	0.539