snrnp27 protein (Cyprinodon variegatus) - STRING interaction network

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Score

snrnp27

Small nuclear ribonucleoprotein 27 (U4/U6.U5). (161 aa)

Predicted Functional Partners:

usp39

0.958

SART1

0.894

lsm7

0.871

rbm42

0.850

snrpe

0.831

snrnp40

0.816

lsm5

0.808

snrpd3

0.804

snrpg

0.796

prpf3

0.791

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SART1	lsm5	ENSCVAP00000008057	ENSCVAP00000021916	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.994
SART1	lsm7	ENSCVAP00000008057	ENSCVAP00000017915	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
SART1	prpf3	ENSCVAP00000008057	ENSCVAP00000024908	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.998
SART1	rbm42	ENSCVAP00000008057	ENSCVAP00000028505	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	RNA binding motif protein 42.	0.950
SART1	snrnp27	ENSCVAP00000008057	ENSCVAP00000001225	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein 27 (U4/U6.U5).	0.894
SART1	snrnp40	ENSCVAP00000008057	ENSCVAP00000005660	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein 40 (U5).	0.930
SART1	snrpd3	ENSCVAP00000008057	ENSCVAP00000000371	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein Sm D3.	0.966
SART1	snrpe	ENSCVAP00000008057	ENSCVAP00000031118	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.995
SART1	snrpg	ENSCVAP00000008057	ENSCVAP00000010608	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Small nuclear ribonucleoprotein G.	0.990
SART1	usp39	ENSCVAP00000008057	ENSCVAP00000019278	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Ubiquitin specific peptidase 39.	0.969
lsm5	SART1	ENSCVAP00000021916	ENSCVAP00000008057	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.994
lsm5	lsm7	ENSCVAP00000021916	ENSCVAP00000017915	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm5	prpf3	ENSCVAP00000021916	ENSCVAP00000024908	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.952
lsm5	rbm42	ENSCVAP00000021916	ENSCVAP00000028505	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	RNA binding motif protein 42.	0.819
lsm5	snrnp27	ENSCVAP00000021916	ENSCVAP00000001225	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein 27 (U4/U6.U5).	0.808
lsm5	snrnp40	ENSCVAP00000021916	ENSCVAP00000005660	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein 40 (U5).	0.804
lsm5	snrpd3	ENSCVAP00000021916	ENSCVAP00000000371	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.987
lsm5	snrpe	ENSCVAP00000021916	ENSCVAP00000031118	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.992
lsm5	snrpg	ENSCVAP00000021916	ENSCVAP00000010608	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.986
lsm5	usp39	ENSCVAP00000021916	ENSCVAP00000019278	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Ubiquitin specific peptidase 39.	0.718