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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107086656Hairy-related 12. (156 aa)    
Predicted Functional Partners:
LOC107085142
Ring finger protein 207a.
    
 
 0.676
nol9
Nucleolar protein 9.
      
 0.672
neurod1
Neurogenic differentiation factor.
   
 0.523
fancg
FA complementation group G.
   
 
 0.508
fancl
FA complementation group L.
    
 
 0.500
fancf
FA complementation group F.
    
 
 0.495
ENSCVAP00000026260
FA complementation group C.
    
   0.487
atoh7
Atonal bHLH transcription factor 7.
   
 
 0.483
grik5
Glutamate receptor, ionotropic, kainate 5.
      
 0.479
LOC107084467
Uncharacterized protein.
      
 0.479
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.