Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001235Chromobox homolog 7b. (162 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.939
rnf2
Ring finger protein 2.
    
 0.939
ENSCVAP00000006163
Bmi1 polycomb ring finger oncogene 1a.
    
 0.890
pcgf2
Polycomb group ring finger 2.
    
 0.890
pcgf1
Polycomb group ring finger 1.
    
 0.888
LOC107089155
Polyhomeotic homolog 2b (Drosophila).
    
 0.865
PCGF3
Polycomb group ring finger 3.
    
 0.863
pcgf6
Polycomb group ring finger 6.
    
 0.845
LOC107089015
Uncharacterized protein.
    
 0.844
LOC107092841
Chromobox homolog 4 (Pc class homolog, Drosophila).
     
0.760
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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