Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC107098562Zgc:65851; Belongs to the intermediate filament family. (552 aa)    
Predicted Functional Partners:
ENSCVAP00000020846
SKI family transcriptional corepressor 2.
      
 0.608
LOC107089243
ZP domain-containing protein.
   
 0.581
evx2
Even-skipped homeobox 2.
      
 0.468
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.421
skor1
SKI family transcriptional corepressor 1b.
      
 0.419
LOC107097778
SKI family transcriptional corepressor 1.
      
 0.419
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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