Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hdgfl2HDGF like 2. (657 aa)    
Predicted Functional Partners:
ENSCVAP00000001305
Pogo transposable element derived with ZNF domain a.
    
 
 0.802
ENSCVAP00000026869
Pogo transposable element derived with ZNF domain b.
    
 
 0.802
HDGF
Heparin binding growth factor.
   
 
 0.636
ENSCVAP00000027270
Uncharacterized protein.
   
 
 0.636
poldip3
Polymerase (DNA-directed), delta interacting protein 3.
   
 
 0.633
tnrc18
Trinucleotide repeat containing 18.
    
 0.611
LOC107105089
BAH domain-containing protein.
    
 0.611
mrpl15
Mitochondrial ribosomal protein L15.
      
 0.608
ENSCVAP00000001842
Tetraspanin.
      
 0.604
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
 
 0.604
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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