Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC107105037Synaptic vesicle glycoprotein 2Ba. (694 aa)    
Predicted Functional Partners:
LOC107096811
Laminin, gamma 3.
     
 0.706
lamc2
Laminin, gamma 2.
     
 0.706
lamc1
Laminin, gamma 1.
     
 0.706
lama4
Laminin, alpha 4.
     
 0.690
ENSCVAP00000012955
Laminin, beta 1b.
     
 0.690
lama5
Laminin, alpha 5.
     
 0.690
lamb1
Laminin, beta 1a.
     
 0.690
lamb2
Laminin, beta 2 (laminin S).
     
 0.690
Lama3
Uncharacterized protein.
     
 0.690
LAMA2
Laminin subunit alpha 2.
     
 0.663
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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