Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC107094643Sphingosine-1-phosphate receptor 5a; Belongs to the G-protein coupled receptor 1 family. (377 aa)    
Predicted Functional Partners:
LOC107082183
Si:dkey-26c10.5.
    
 0.745
GNG4
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
    
  0.527
pdgfrb
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
   
 
 0.518
LOC107105061
Uncharacterized protein.
      
 0.436
ENSCVAP00000009969
CUB domain-containing protein.
      
 0.436
S1pr2
Sphingosine-1-phosphate receptor 2; Belongs to the G-protein coupled receptor 1 family.
    
  0.430
dlx2
Distal-less homeobox 2b.
      
 0.426
acer2
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.419
LOC107081500
WD_REPEATS_REGION domain-containing protein.
    
  0.413
LOC107089355
WD_REPEATS_REGION domain-containing protein.
    
  0.413
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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