STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001255Spatacsin_C domain-containing protein. (1125 aa)    
Predicted Functional Partners:
zfyve26
Zinc finger, FYVE domain containing 26.
   
 
 0.996
ap5z1
Adaptor related protein complex 5 subunit zeta 1.
    
 
 0.975
ap5m1
Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.
    
 
 0.971
ap5s1
Adaptor related protein complex 5 subunit sigma 1.
    
 
 0.957
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.851
spg21
SPG21 abhydrolase domain containing, maspardin.
      
 0.797
atxn2
Ataxin 2.
   
  
 0.757
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
      
 0.753
synj1
Synaptojanin 1.
      
 0.751
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
      
 0.750
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.