Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vps13cVacuolar protein sorting 13 homolog C. (2818 aa)    
Predicted Functional Partners:
ENSCVAP00000001332
Uncharacterized protein.
 
     0.932
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.752
synj1
Synaptojanin 1.
   
 
 0.690
chtf18
AAA domain-containing protein.
    
   0.610
nudcd1
NudC domain containing 1.
    
   0.588
ENSCVAP00000001255
Spatacsin_C domain-containing protein.
   
  
 0.580
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.553
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
   
  
 0.551
vps39
VPS39 subunit of HOPS complex.
   
 
 0.546
RIC3
RIC3 acetylcholine receptor chaperone.
   
  
 0.542
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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