STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001278Uncharacterized protein. (119 aa)    
Predicted Functional Partners:
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.925
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.924
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.914
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.910
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.907
mrpl51
Mitochondrial ribosomal protein L51.
   
 
 0.888
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.885
ENSCVAP00000029115
RF_PROK_I domain-containing protein.
   
 
 0.884
mrpl13
Mitochondrial ribosomal protein L13.
   
 
 0.868
mrpl43
Mitochondrial ribosomal protein L43.
   
 
 0.864
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.