Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC107097307Si:ch1073-396h14.1. (679 aa)    
Predicted Functional Partners:
mertk
C-mer proto-oncogene tyrosine kinase a.
    
 0.906
ENSCVAP00000017074
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
    
 0.733
LOC107101915
Transforming growth factor, alpha.
   
 
 0.634
LOC107093971
Rhomboid 5 homolog 1b (Drosophila).
    
 0.596
rhbdf2
Rhomboid domain-containing protein.
    
 0.596
rhbdf1
Rhomboid 5 homolog 1a (Drosophila).
    
 0.596
LOC107092801
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.514
ENSCVAP00000026250
TNFR-Cys domain-containing protein.
    
 
 0.473
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
    
 
 0.467
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 
 0.420
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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