STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097307Si:ch1073-396h14.1. (679 aa)    
Predicted Functional Partners:
ENSCVAP00000017074
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
     
 0.648
LOC107092801
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.619
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.586
LOC107083192
TIMP metallopeptidase inhibitor 2b.
    
 0.586
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.586
LOC107101915
Transforming growth factor, alpha.
   
 
 0.460
LOC107093971
Rhomboid 5 homolog 1b (Drosophila).
    
 0.428
rhbdf2
Rhomboid domain-containing protein.
    
 0.428
rhbdf1
Rhomboid 5 homolog 1a (Drosophila).
    
 0.428
NCSTN
Nicastrin.
    
 
 0.414
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.