Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC107095804Chondroitin sulfate proteoglycan 4. (2290 aa)    
Predicted Functional Partners:
grip1
Glutamate receptor interacting protein 1.
    
 0.836
col6a1
Collagen, type VI, alpha 1.
   
  
 0.567
pdgfrb
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
   
 
 0.548
ENSCVAP00000022019
IRK domain-containing protein.
     
 0.513
chsy1
Hexosyltransferase.
     
 0.507
csgalnact2
Hexosyltransferase.
     
 0.473
Chst11
Carbohydrate sulfotransferase.
    
 0.470
LOC107089049
Proteolipid protein 1a.
      
 0.464
LOC107098240
Proteolipid protein 1b.
      
 0.464
NECTIN3
Nectin cell adhesion molecule 3.
   
  
 0.461
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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