STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095804Chondroitin sulfate proteoglycan 4. (2290 aa)    
Predicted Functional Partners:
grip1
Glutamate receptor interacting protein 1.
    
 
 0.767
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.545
ENSCVAP00000029384
Decorin; May affect the rate of fibrils formation.
     
 0.545
has3
Hyaluronan synthase 3.
      
 0.493
usp32
Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.
      
 0.485
ENSCVAP00000008678
Uncharacterized protein.
      
 0.483
ENSCVAP00000015132
Uncharacterized protein.
      
 0.483
chsy1
Hexosyltransferase.
     
 0.481
Chst11
Carbohydrate sulfotransferase.
     
 0.441
hspg2
Heparan sulfate proteoglycan 2.
   
 
0.435
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.