STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001285LSDAT_euk domain-containing protein. (328 aa)    
Predicted Functional Partners:
ENSCVAP00000002659
Ion_trans domain-containing protein.
 
 
 0.934
ENSCVAP00000020707
Uncharacterized protein.
 
     0.926
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.544
TYR
Tyrosinase.
   
  
 0.535
LOC107095815
Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.
      
 0.531
trpc4ap
Transient receptor potential cation channel, subfamily C, member 4 associated protein a.
     
 0.514
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 0.462
ENSCVAP00000021134
Nyctalopin.
      
 0.459
cnpy3
Canopy FGF signaling regulator 3.
      
 0.458
LOC107082237
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.450
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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