Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cers6Ceramide synthase 6. (393 aa)    
Predicted Functional Partners:
kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.950
ugcg
UDP-glucose ceramide glucosyltransferase.
     
 0.927
galc
Galactosylceramidase b.
     
 0.916
ugt8
UDP glycosyltransferase 8; Belongs to the UDP-glycosyltransferase family.
     
 0.916
LOC107102397
Sphingomyelin phosphodiesterase 5.
     
 0.778
LOC107086790
Zgc:158263.
     
 0.772
degs2
Delta(4)-desaturase, sphingolipid 2.
   
 0.770
degs1
Delta(4)-desaturase, sphingolipid 1.
   
 0.770
LOC107084889
acidPPc domain-containing protein.
   
 0.768
LOC107082722
Si:ch211-212g7.6.
   
 0.768
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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