Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001293THAP-type domain-containing protein. (87 aa)    
Predicted Functional Partners:
ENSCVAP00000030025
Si:ch211-195d17.2.
    
 0.961
pcgf6
Polycomb group ring finger 6.
    
 0.937
wdr5
WD repeat domain 5.
    
 
 0.927
RING1
Ring finger protein 1.
    
 0.906
rnf2
Ring finger protein 2.
    
 0.906
pcgf1
Polycomb group ring finger 1.
    
 0.893
mrgbp
MRG/MORF4L binding protein.
    
 
 0.893
LOC107084325
Chromobox homolog 3a (HP1 gamma homolog, Drosophila).
    
 0.863
tfdp1
Transcription factor.
   
 0.858
yaf2
YY1 associated factor 2.
    
 0.851
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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