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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001293THAP-type domain-containing protein. (87 aa)    
Predicted Functional Partners:
ENSCVAP00000030025
Si:ch211-195d17.2.
    
 0.903
pcgf6
Polycomb group ring finger 6.
    
 0.873
yaf2
YY1 associated factor 2.
    
 0.863
YAF2
YY1 associated factor 2.
    
 0.863
rybp
RING1 and YY1 binding protein b.
    
 0.849
LOC107087587
YY1 transcription factor.
    
 0.845
rnf2
Ring finger protein 2.
    
 0.832
RING1
Ring finger protein 1.
    
 0.830
pcgf1
Polycomb group ring finger 1.
    
 0.804
YY1
YY1 transcription factor b.
    
 0.796
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.