STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpm4Tropomyosin 4a; Belongs to the tropomyosin family. (284 aa)    
Predicted Functional Partners:
ENSCVAP00000012785
Troponin T type 2a (cardiac).
   
 0.959
LOC107089160
Troponin T type 2b (cardiac).
   
 0.959
LOC107094549
Actin alpha cardiac muscle 1a.
   
 0.952
ACTA1
Actin alpha 1, skeletal muscle.
   
 0.952
LOC107088037
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.836
ENSCVAP00000008323
Cardiac myosin light chain-1.
   
 0.732
ENSCVAP00000012826
Troponin I type 1a (skeletal, slow).
   
 0.680
LOC107093602
Troponin T type 3a (skeletal, fast).
   
 0.662
LOC107083859
Troponin I type 2b (skeletal, fast), tandem duplicate 1.
   
 0.643
TNNI2-2
Troponin I2, fast skeletal type.
   
 0.643
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.