LOC107092869 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107092869

Ran GTPase activating protein 1b. (567 aa)

Predicted Functional Partners:

ranbp2

0.999

sumo1

0.988

ranbp1

0.977

ube2i

0.975

LOC107087199

0.975

adgrd1

0.946

ran

0.946

rcc1

0.931

nup107

0.884

nup133

0.871

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107087199	LOC107092869	ENSCVAP00000021415	ENSCVAP00000001304	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ran GTPase activating protein 1b.	0.975
LOC107087199	adgrd1	ENSCVAP00000021415	ENSCVAP00000011123	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.706
LOC107087199	nup107	ENSCVAP00000021415	ENSCVAP00000004908	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.718
LOC107087199	nup133	ENSCVAP00000021415	ENSCVAP00000011656	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Nucleoporin 133.	0.701
LOC107087199	ran	ENSCVAP00000021415	ENSCVAP00000017476	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.706
LOC107087199	ranbp1	ENSCVAP00000021415	ENSCVAP00000024560	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RAN binding protein 1.	0.774
LOC107087199	ranbp2	ENSCVAP00000021415	ENSCVAP00000013540	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RAN binding protein 2.	0.999
LOC107087199	rcc1	ENSCVAP00000021415	ENSCVAP00000031178	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Regulator of chromosome condensation 1.	0.580
LOC107087199	sumo1	ENSCVAP00000021415	ENSCVAP00000009217	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Small ubiquitin-related modifier.	0.997
LOC107087199	ube2i	ENSCVAP00000021415	ENSCVAP00000019192	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.900
LOC107092869	LOC107087199	ENSCVAP00000001304	ENSCVAP00000021415	Ran GTPase activating protein 1b.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.975
LOC107092869	adgrd1	ENSCVAP00000001304	ENSCVAP00000011123	Ran GTPase activating protein 1b.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.946
LOC107092869	nup107	ENSCVAP00000001304	ENSCVAP00000004908	Ran GTPase activating protein 1b.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.884
LOC107092869	nup133	ENSCVAP00000001304	ENSCVAP00000011656	Ran GTPase activating protein 1b.	Nucleoporin 133.	0.871
LOC107092869	ran	ENSCVAP00000001304	ENSCVAP00000017476	Ran GTPase activating protein 1b.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.946
LOC107092869	ranbp1	ENSCVAP00000001304	ENSCVAP00000024560	Ran GTPase activating protein 1b.	RAN binding protein 1.	0.977
LOC107092869	ranbp2	ENSCVAP00000001304	ENSCVAP00000013540	Ran GTPase activating protein 1b.	RAN binding protein 2.	0.999
LOC107092869	rcc1	ENSCVAP00000001304	ENSCVAP00000031178	Ran GTPase activating protein 1b.	Regulator of chromosome condensation 1.	0.931
LOC107092869	sumo1	ENSCVAP00000001304	ENSCVAP00000009217	Ran GTPase activating protein 1b.	Small ubiquitin-related modifier.	0.988
LOC107092869	ube2i	ENSCVAP00000001304	ENSCVAP00000019192	Ran GTPase activating protein 1b.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.975