STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107092852Tumor necrosis factor receptor superfamily, member a. (308 aa)    
Predicted Functional Partners:
LOC107104273
Uncharacterized protein.
  
 
0.970
tnfsf10
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
     
 0.924
LOC107101768
Uncharacterized protein.
    
  0.901
LOC107094654
Uncharacterized protein.
  
  
 
0.900
LOC107086824
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.807
LOC107082055
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
 0.807
LOC107095892
Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.
    
 0.786
tradd
Tnfrsf1a-associated via death domain.
  
 
 0.764
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.753
ENSCVAP00000016344
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.734
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.