STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcb11ATP-binding cassette, sub-family B (MDR/TAP), member 11a. (1212 aa)    
Predicted Functional Partners:
ENSCVAP00000001543
Katanin p60 subunit A-like 2.
  
 0.580
LOC107103459
Cholesterol 7-alpha-monooxygenase; Belongs to the cytochrome P450 family.
   
 
 0.547
LOC107086808
Hemopexin; Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
   
  
 0.518
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.517
vps33b
VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.492
vps53
VPS53 subunit of GARP complex.
      
 0.485
LOC107090723
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.480
hpx
Hemopexin a.
   
  
 0.469
acaca
Acetyl-CoA carboxylase alpha.
   
 
 0.463
LOC107100048
Acetyl-CoA carboxylase beta.
   
 
 0.463
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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