Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
abcb11ATP-binding cassette, sub-family B (MDR/TAP), member 11a. (1212 aa)    
Predicted Functional Partners:
LOC107087054
ATP-binding cassette, sub-family B (MDR/TAP), member 11b.
  
  
 
0.901
ENSCVAP00000001543
Katanin p60 subunit A-like 2.
  
 0.512
nbr1
NBR1 autophagy cargo receptor a.
    
 
 0.506
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
 0.503
LOC107091686
RING-CH-type domain-containing protein.
   
 
 0.499
marchf6
Membrane-associated ring finger (C3HC4) 6.
   
 
 0.499
acaca
Acetyl-CoA carboxylase alpha.
   
 
 0.495
LOC107100048
Acetyl-CoA carboxylase beta.
   
 
 0.495
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
 0.486
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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