STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001332Uncharacterized protein. (526 aa)    
Predicted Functional Partners:
vps13c
Vacuolar protein sorting 13 homolog C.
 
     0.932
gak
Cyclin G associated kinase.
    
 
 0.625
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.512
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.510
synj1
Synaptojanin 1.
    
 
 0.469
coasy
CoA synthase.
      
 0.450
vps39
VPS39 subunit of HOPS complex.
   
 
 0.416
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.410
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
   
  
 0.403
tmem134
Transmembrane protein 134.
      
 0.400
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.