Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098533Si:dkey-238f9.1. (139 aa)    
Predicted Functional Partners:
FAM155A
Family with sequence similarity 155 member A.
      
 0.623
tmem117
Transmembrane protein 117.
      
 0.607
naaladl2
Uncharacterized protein.
      
 0.545
NXPH4
Neurexophilin; May be signaling molecules that resemble neuropeptides.
      
 0.537
MAMDC2
MAM domain containing 2.
      
 0.537
kbtbd12
Kelch repeat and BTB (POZ) domain containing 12.
      
 0.533
tmem161b
Transmembrane protein 161B.
      
 0.528
cwf19l2
CWF19 like cell cycle control factor 2.
      
 0.503
LOC107099303
Neurexophilin; May be signaling molecules that resemble neuropeptides.
  
  
 0.478
mfap1
Microfibril associated protein 1.
      
 0.460
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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