dock3 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dock3

Uncharacterized protein; Belongs to the DOCK family. (1901 aa)

Predicted Functional Partners:

LOC107083278

0.818

LOC107097885

0.818

LOC107084309

0.818

crk

0.799

LOC107081852

0.799

crkl

0.799

dock4

0.781

LOC107082942

0.645

LOC107089030

0.645

ENSCVAP00000018233

0.645

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000018233	LOC107081852	ENSCVAP00000018233	ENSCVAP00000024362	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.467
ENSCVAP00000018233	LOC107082942	ENSCVAP00000018233	ENSCVAP00000017654	Ras homolog gene family, member Gd.	Ras homolog family member Gb.	0.900
ENSCVAP00000018233	LOC107083278	ENSCVAP00000018233	ENSCVAP00000005339	Ras homolog gene family, member Gd.	Engulfment and cell motility 1.	0.976
ENSCVAP00000018233	LOC107084309	ENSCVAP00000018233	ENSCVAP00000025684	Ras homolog gene family, member Gd.	Engulfment and cell motility 3.	0.976
ENSCVAP00000018233	LOC107089030	ENSCVAP00000018233	ENSCVAP00000018216	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.901
ENSCVAP00000018233	LOC107097885	ENSCVAP00000018233	ENSCVAP00000023470	Ras homolog gene family, member Gd.	Engulfment and cell motility 2.	0.976
ENSCVAP00000018233	crk	ENSCVAP00000018233	ENSCVAP00000011522	Ras homolog gene family, member Gd.	CRK proto-oncogene, adaptor protein.	0.467
ENSCVAP00000018233	crkl	ENSCVAP00000018233	ENSCVAP00000026819	Ras homolog gene family, member Gd.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.467
ENSCVAP00000018233	dock3	ENSCVAP00000018233	ENSCVAP00000001356	Ras homolog gene family, member Gd.	Uncharacterized protein; Belongs to the DOCK family.	0.645
ENSCVAP00000018233	dock4	ENSCVAP00000018233	ENSCVAP00000014001	Ras homolog gene family, member Gd.	Dedicator of cytokinesis 4b; Belongs to the DOCK family.	0.777
LOC107081852	ENSCVAP00000018233	ENSCVAP00000024362	ENSCVAP00000018233	Uncharacterized protein.	Ras homolog gene family, member Gd.	0.467
LOC107081852	LOC107082942	ENSCVAP00000024362	ENSCVAP00000017654	Uncharacterized protein.	Ras homolog family member Gb.	0.467
LOC107081852	LOC107083278	ENSCVAP00000024362	ENSCVAP00000005339	Uncharacterized protein.	Engulfment and cell motility 1.	0.766
LOC107081852	LOC107084309	ENSCVAP00000024362	ENSCVAP00000025684	Uncharacterized protein.	Engulfment and cell motility 3.	0.766
LOC107081852	LOC107089030	ENSCVAP00000024362	ENSCVAP00000018216	Uncharacterized protein.	Uncharacterized protein.	0.467
LOC107081852	LOC107097885	ENSCVAP00000024362	ENSCVAP00000023470	Uncharacterized protein.	Engulfment and cell motility 2.	0.766
LOC107081852	crk	ENSCVAP00000024362	ENSCVAP00000011522	Uncharacterized protein.	CRK proto-oncogene, adaptor protein.	0.901
LOC107081852	crkl	ENSCVAP00000024362	ENSCVAP00000026819	Uncharacterized protein.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.915
LOC107081852	dock3	ENSCVAP00000024362	ENSCVAP00000001356	Uncharacterized protein.	Uncharacterized protein; Belongs to the DOCK family.	0.799
LOC107081852	dock4	ENSCVAP00000024362	ENSCVAP00000014001	Uncharacterized protein.	Dedicator of cytokinesis 4b; Belongs to the DOCK family.	0.742