Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
barx1BARX homeobox 1. (237 aa)    
Predicted Functional Partners:
ENSCVAP00000031730
Myomesin 2a.
   
  
 0.653
LOC107095536
Uncharacterized protein.
    
 
 0.606
pax9
Paired box 9.
      
 0.588
LOC107092429
ISL LIM homeobox 1.
    
 
 0.567
LOC107096942
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.561
TBX22
T-box transcription factor 22.
   
 
 0.559
hand2
Heart and neural crest derivatives expressed 2.
      
 0.558
syde1
Rho-GAP domain-containing protein.
      
 0.557
fras1
Fraser extracellular matrix complex subunit 1.
      
 0.547
ahi1
Abelson helper integration site 1.
    
  0.542
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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