Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sez6Seizure related 6 homolog a. (1009 aa)    
Predicted Functional Partners:
srrd
SRR1 domain containing.
      
 0.531
negr1
Neuronal growth regulator 1.
   
 0.464
LOC107083813
Leucine rich repeat and Ig domain containing 2a.
   
 0.452
ppp4c
Serine/threonine-protein phosphatase.
    
 0.439
asphd2
Aspartate beta-hydroxylase domain containing 2.
   
  
 0.430
ENSCVAP00000015893
NDK domain-containing protein.
   
 0.430
LOC107103933
Asp_Arg_Hydrox domain-containing protein.
   
  
 0.430
wdr90
WD repeat domain 90.
    
 0.418
kif22
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.407
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
    
 
 0.400
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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