LOC107105008 protein (Cyprinodon variegatus)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC107105008

Uncharacterized protein. (306 aa)

Predicted Functional Partners:

ubxn7

0.589

LOC107103748

0.571

UQCRFS1

0.571

mrpl46

0.504

ENSCVAP00000012045

0.487

LOC107089462

0.481

mrpl19

0.479

LOC107096309

0.478

mrpl3

0.477

mrpl33

0.460

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000012045	LOC107089462	ENSCVAP00000012045	ENSCVAP00000021043	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L23.	0.980
ENSCVAP00000012045	LOC107105008	ENSCVAP00000012045	ENSCVAP00000001396	Mitochondrial ribosomal protein L27.	Uncharacterized protein.	0.487
ENSCVAP00000012045	mrpl19	ENSCVAP00000012045	ENSCVAP00000000868	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L19.	0.996
ENSCVAP00000012045	mrpl3	ENSCVAP00000012045	ENSCVAP00000009788	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.985
ENSCVAP00000012045	mrpl33	ENSCVAP00000012045	ENSCVAP00000021455	Mitochondrial ribosomal protein L27.	Uncharacterized protein.	0.993
ENSCVAP00000012045	mrpl46	ENSCVAP00000012045	ENSCVAP00000030157	Mitochondrial ribosomal protein L27.	Mitochondrial ribosomal protein L46.	0.967
LOC107089462	ENSCVAP00000012045	ENSCVAP00000021043	ENSCVAP00000012045	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L27.	0.980
LOC107089462	LOC107105008	ENSCVAP00000021043	ENSCVAP00000001396	Mitochondrial ribosomal protein L23.	Uncharacterized protein.	0.481
LOC107089462	mrpl19	ENSCVAP00000021043	ENSCVAP00000000868	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L19.	0.991
LOC107089462	mrpl3	ENSCVAP00000021043	ENSCVAP00000009788	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.975
LOC107089462	mrpl33	ENSCVAP00000021043	ENSCVAP00000021455	Mitochondrial ribosomal protein L23.	Uncharacterized protein.	0.876
LOC107089462	mrpl46	ENSCVAP00000021043	ENSCVAP00000030157	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L46.	0.982
LOC107096309	LOC107103748	ENSCVAP00000020447	ENSCVAP00000005128	Zgc:174935.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.745
LOC107096309	LOC107105008	ENSCVAP00000020447	ENSCVAP00000001396	Zgc:174935.	Uncharacterized protein.	0.478
LOC107096309	UQCRFS1	ENSCVAP00000020447	ENSCVAP00000013646	Zgc:174935.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.745
LOC107103748	LOC107096309	ENSCVAP00000005128	ENSCVAP00000020447	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Zgc:174935.	0.745
LOC107103748	LOC107105008	ENSCVAP00000005128	ENSCVAP00000001396	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein.	0.571
LOC107103748	UQCRFS1	ENSCVAP00000005128	ENSCVAP00000013646	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.901
LOC107105008	ENSCVAP00000012045	ENSCVAP00000001396	ENSCVAP00000012045	Uncharacterized protein.	Mitochondrial ribosomal protein L27.	0.487
LOC107105008	LOC107089462	ENSCVAP00000001396	ENSCVAP00000021043	Uncharacterized protein.	Mitochondrial ribosomal protein L23.	0.481