STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107105008Uncharacterized protein. (306 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
   0.672
ENSCVAP00000012045
Mitochondrial ribosomal protein L27.
   
 
 0.550
LOC107089462
Mitochondrial ribosomal protein L23.
   
 
 0.546
mrpl22
Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.545
mrpl33
Uncharacterized protein.
   
 
 0.543
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.541
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.540
mrpl43
Mitochondrial ribosomal protein L43.
   
   0.533
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.530
mrps10
Mitochondrial ribosomal protein S10.
   
 
 0.525
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.