erbin protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

erbin

Erbb2 interacting protein. (1379 aa)

Predicted Functional Partners:

nod2

0.929

erbb2

0.620

ppp1cc

0.611

LOC107094299

0.611

LOC107096949

0.611

Ptrh2

0.606

ENSCVAP00000015371

0.596

PKP4

0.596

erbb3

0.566

LOC107084231

0.566

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000015371	erbin	ENSCVAP00000015371	ENSCVAP00000001397	Uncharacterized protein.	Erbb2 interacting protein.	0.596
LOC107084231	erbb2	ENSCVAP00000010134	ENSCVAP00000004145	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.810
LOC107084231	erbin	ENSCVAP00000010134	ENSCVAP00000001397	Receptor protein-tyrosine kinase.	Erbb2 interacting protein.	0.566
LOC107094299	erbin	ENSCVAP00000028763	ENSCVAP00000001397	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Erbb2 interacting protein.	0.611
LOC107096949	erbin	ENSCVAP00000028866	ENSCVAP00000001397	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Erbb2 interacting protein.	0.611
PKP4	erbin	ENSCVAP00000021601	ENSCVAP00000001397	Plakophilin 4.	Erbb2 interacting protein.	0.596
Ptrh2	erbin	ENSCVAP00000014268	ENSCVAP00000001397	Peptidyl-tRNA hydrolase 2.	Erbb2 interacting protein.	0.606
erbb2	LOC107084231	ENSCVAP00000004145	ENSCVAP00000010134	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.810
erbb2	erbb3	ENSCVAP00000004145	ENSCVAP00000000382	Receptor protein-tyrosine kinase.	Protein kinase domain-containing protein.	0.814
erbb2	erbin	ENSCVAP00000004145	ENSCVAP00000001397	Receptor protein-tyrosine kinase.	Erbb2 interacting protein.	0.620
erbb3	erbb2	ENSCVAP00000000382	ENSCVAP00000004145	Protein kinase domain-containing protein.	Receptor protein-tyrosine kinase.	0.814
erbb3	erbin	ENSCVAP00000000382	ENSCVAP00000001397	Protein kinase domain-containing protein.	Erbb2 interacting protein.	0.566
erbin	ENSCVAP00000015371	ENSCVAP00000001397	ENSCVAP00000015371	Erbb2 interacting protein.	Uncharacterized protein.	0.596
erbin	LOC107084231	ENSCVAP00000001397	ENSCVAP00000010134	Erbb2 interacting protein.	Receptor protein-tyrosine kinase.	0.566
erbin	LOC107094299	ENSCVAP00000001397	ENSCVAP00000028763	Erbb2 interacting protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.611
erbin	LOC107096949	ENSCVAP00000001397	ENSCVAP00000028866	Erbb2 interacting protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.611
erbin	PKP4	ENSCVAP00000001397	ENSCVAP00000021601	Erbb2 interacting protein.	Plakophilin 4.	0.596
erbin	Ptrh2	ENSCVAP00000001397	ENSCVAP00000014268	Erbb2 interacting protein.	Peptidyl-tRNA hydrolase 2.	0.606
erbin	erbb2	ENSCVAP00000001397	ENSCVAP00000004145	Erbb2 interacting protein.	Receptor protein-tyrosine kinase.	0.620
erbin	erbb3	ENSCVAP00000001397	ENSCVAP00000000382	Erbb2 interacting protein.	Protein kinase domain-containing protein.	0.566