Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001401Hes family bHLH transcription factor 2, tandem duplicate 1. (94 aa)    
Predicted Functional Partners:
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.457
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.457
LOC107099483
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.457
ENSCVAP00000007008
Achaete-scute family bHLH transcription factor 1b.
   
 0.447
Ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.447
fancf
FA complementation group F.
    
   0.424
fancl
FA complementation group L.
    
   0.424
ENSCVAP00000026260
FA complementation group C.
    
   0.424
fancg
FA complementation group G.
    
   0.424
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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