STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam174bFamily with sequence similarity 174 member B. (134 aa)    
Predicted Functional Partners:
lysmd4
LysM, putative peptidoglycan-binding, domain containing 4.
      
 0.753
nudt8
Nudix hydrolase domain-containing protein.
      
 0.745
nup50
Nucleoporin 50.
      
 0.613
pdxp
Pyridoxal (pyridoxine, vitamin B6) phosphatase; Belongs to the HAD-like hydrolase superfamily.
      
 0.607
tbc1d16
TBC1 domain family, member 16.
      
 0.606
tnfaip8l3
Tumor necrosis factor, alpha-induced protein 8-like 3.
      
 0.589
LOC107102580
Translocator protein.
      
 0.575
xxylt1
Xyloside xylosyltransferase 1.
      
 0.568
thap3
THAP-type domain-containing protein.
      
 0.534
nudt7
Nudix (nucleoside diphosphate linked moiety X)-type motif 7.
      
 0.533
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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