STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107105003Uncharacterized protein. (262 aa)    
Predicted Functional Partners:
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.819
LRRC49
Leucine rich repeat containing 49.
    
 0.774
nicn1
Nicolin 1.
   
 0.744
ENSCVAP00000005823
Uncharacterized protein.
    
 0.737
tpgs2
Tubulin polyglutamylase complex subunit 2.
   
 0.734
tbc1d19
TBC1 domain family, member 19.
   
 
 0.568
dcp1b
Decapping mRNA 1B.
    
 
 0.540
dcp1a
Decapping mRNA 1A.
    
 
 0.538
kiaa1841
Si:ch211-189k9.2.
    
   0.487
DNALI1
Dynein axonemal light intermediate chain 1.
  
  
 0.450
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.