tatdn1 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tatdn1

TatD DNase domain containing 1. (312 aa)

Predicted Functional Partners:

endog

0.584

LOC107090837

0.558

eif3e

0.558

exosc5

0.497

yars1

0.472

sdha

0.456

gulp1

0.451

ENSCVAP00000001543

0.438

srp54

0.423

ssbp1

0.423

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000001543	srp54	ENSCVAP00000001543	ENSCVAP00000008568	Katanin p60 subunit A-like 2.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.472
ENSCVAP00000001543	tatdn1	ENSCVAP00000001543	ENSCVAP00000001410	Katanin p60 subunit A-like 2.	TatD DNase domain containing 1.	0.438
LOC107090837	eif3e	ENSCVAP00000013941	ENSCVAP00000026512	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.900
LOC107090837	tatdn1	ENSCVAP00000013941	ENSCVAP00000001410	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	TatD DNase domain containing 1.	0.558
LOC107090837	yars1	ENSCVAP00000013941	ENSCVAP00000014000	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Tyrosine--tRNA ligase.	0.477
eif3e	LOC107090837	ENSCVAP00000026512	ENSCVAP00000013941	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.900
eif3e	tatdn1	ENSCVAP00000026512	ENSCVAP00000001410	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	TatD DNase domain containing 1.	0.558
eif3e	yars1	ENSCVAP00000026512	ENSCVAP00000014000	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Tyrosine--tRNA ligase.	0.477
endog	exosc5	ENSCVAP00000008303	ENSCVAP00000024966	Endonuclease.	Exosome component 5.	0.493
endog	tatdn1	ENSCVAP00000008303	ENSCVAP00000001410	Endonuclease.	TatD DNase domain containing 1.	0.584
exosc5	endog	ENSCVAP00000024966	ENSCVAP00000008303	Exosome component 5.	Endonuclease.	0.493
exosc5	tatdn1	ENSCVAP00000024966	ENSCVAP00000001410	Exosome component 5.	TatD DNase domain containing 1.	0.497
gulp1	tatdn1	ENSCVAP00000032200	ENSCVAP00000001410	GULP PTB domain containing engulfment adaptor 1a.	TatD DNase domain containing 1.	0.451
sdha	tatdn1	ENSCVAP00000021617	ENSCVAP00000001410	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	TatD DNase domain containing 1.	0.456
sdha	yars1	ENSCVAP00000021617	ENSCVAP00000014000	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Tyrosine--tRNA ligase.	0.411
srp54	ENSCVAP00000001543	ENSCVAP00000008568	ENSCVAP00000001543	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Katanin p60 subunit A-like 2.	0.472
srp54	tatdn1	ENSCVAP00000008568	ENSCVAP00000001410	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	TatD DNase domain containing 1.	0.423
srp54	yars1	ENSCVAP00000008568	ENSCVAP00000014000	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Tyrosine--tRNA ligase.	0.798
ssbp1	tatdn1	ENSCVAP00000012948	ENSCVAP00000001410	Single-stranded DNA binding protein 1.	TatD DNase domain containing 1.	0.423
ssbp1	yars1	ENSCVAP00000012948	ENSCVAP00000014000	Single-stranded DNA binding protein 1.	Tyrosine--tRNA ligase.	0.810