Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psmd8Proteasome 26S subunit, non-ATPase 8. (265 aa)    
Predicted Functional Partners:
psmd13
Proteasome 26S subunit, non-ATPase 13.
   
 0.999
psma2
Proteasome subunit alpha type.
   
 0.999
psmd7
Proteasome 26S subunit, non-ATPase 7.
   
 0.999
psmc4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
   
 0.999
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
   
 0.999
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 0.999
psmb2
Proteasome subunit beta.
   
 0.999
psmd3
Proteasome 26S subunit, non-ATPase 3.
   
 0.999
psma4
Proteasome subunit alpha type.
   
 0.999
psmb3
Proteasome subunit beta.
   
 0.999
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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