STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107105001DEF6 guanine nucleotide exchange factor c. (629 aa)    
Predicted Functional Partners:
mst1r
Macrophage stimulating 1 receptor b.
   
 0.636
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.636
LOC107097508
Macrophage stimulating 1 receptor a.
   
 0.636
LOC107085465
RAS protein activator like 3.
    
 0.424
Rasal2
RAS protein activator like 2.
    
 0.424
dab2ip
DAB2 interacting protein b.
    
 0.424
LOC107104260
Uncharacterized protein.
    
 0.424
ENSCVAP00000019080
DUF3498 domain-containing protein.
    
 0.424
LOC107088356
Synaptic Ras GTPase activating protein 1a.
    
 0.424
LOC107103499
Synaptic Ras GTPase activating protein 1b.
    
 0.424
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.