Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
chd2Chromodomain helicase DNA binding protein 2. (1642 aa)    
Predicted Functional Partners:
ssrp1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
    
 
 0.696
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.687
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.670
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 
 0.630
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.599
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.583
fancm
Uncharacterized protein.
    
 0.567
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 0.566
LOC107101413
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
  
 
0.565
Arid4a
Tudor domain-containing protein.
   
 0.562
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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