acad9 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

acad9

Acyl-CoA dehydrogenase family, member 9. (613 aa)

Predicted Functional Partners:

LOC107102357

0.942

ndufaf1

0.940

eci2

0.892

timmdc1

0.880

etfa

0.879

ND6

0.870

ndufaf3

0.869

ndufs2

0.860

ndufs3

0.857

hadh

0.856

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107102357	ND6	ENSCVAP00000012212	ENSCVAP00000000013	ECSIT signalling integrator.	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.655
LOC107102357	acad9	ENSCVAP00000012212	ENSCVAP00000001434	ECSIT signalling integrator.	Acyl-CoA dehydrogenase family, member 9.	0.942
LOC107102357	ndufaf1	ENSCVAP00000012212	ENSCVAP00000032308	ECSIT signalling integrator.	NADH:ubiquinone oxidoreductase complex assembly factor 1.	0.998
LOC107102357	ndufaf3	ENSCVAP00000012212	ENSCVAP00000007208	ECSIT signalling integrator.	NADH:ubiquinone oxidoreductase complex assembly factor.	0.986
LOC107102357	ndufs2	ENSCVAP00000012212	ENSCVAP00000023824	ECSIT signalling integrator.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.984
LOC107102357	ndufs3	ENSCVAP00000012212	ENSCVAP00000021919	ECSIT signalling integrator.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.983
LOC107102357	timmdc1	ENSCVAP00000012212	ENSCVAP00000006756	ECSIT signalling integrator.	Translocase of inner mitochondrial membrane domain containing 1.	0.987
ND6	LOC107102357	ENSCVAP00000000013	ENSCVAP00000012212	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	ECSIT signalling integrator.	0.655
ND6	acad9	ENSCVAP00000000013	ENSCVAP00000001434	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Acyl-CoA dehydrogenase family, member 9.	0.870
ND6	ndufaf1	ENSCVAP00000000013	ENSCVAP00000032308	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase complex assembly factor 1.	0.802
ND6	ndufaf3	ENSCVAP00000000013	ENSCVAP00000007208	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase complex assembly factor.	0.989
ND6	ndufs2	ENSCVAP00000000013	ENSCVAP00000023824	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.980
ND6	ndufs3	ENSCVAP00000000013	ENSCVAP00000021919	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.998
ND6	timmdc1	ENSCVAP00000000013	ENSCVAP00000006756	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Translocase of inner mitochondrial membrane domain containing 1.	0.473
acad9	LOC107102357	ENSCVAP00000001434	ENSCVAP00000012212	Acyl-CoA dehydrogenase family, member 9.	ECSIT signalling integrator.	0.942
acad9	ND6	ENSCVAP00000001434	ENSCVAP00000000013	Acyl-CoA dehydrogenase family, member 9.	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.870
acad9	eci2	ENSCVAP00000001434	ENSCVAP00000017528	Acyl-CoA dehydrogenase family, member 9.	Enoyl-CoA delta isomerase 2.	0.892
acad9	etfa	ENSCVAP00000001434	ENSCVAP00000013649	Acyl-CoA dehydrogenase family, member 9.	Electron transfer flavoprotein subunit alpha.	0.879
acad9	hadh	ENSCVAP00000001434	ENSCVAP00000020711	Acyl-CoA dehydrogenase family, member 9.	Hydroxyacyl-CoA dehydrogenase.	0.856
acad9	ndufaf1	ENSCVAP00000001434	ENSCVAP00000032308	Acyl-CoA dehydrogenase family, member 9.	NADH:ubiquinone oxidoreductase complex assembly factor 1.	0.940