STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
washc3WASH complex subunit 3. (211 aa)    
Predicted Functional Partners:
washc5
WASH complex subunit 5.
    
 0.997
LOC107090566
WAS protein family homolog 1.
    
 0.995
washc4
WASH complex subunit 4.
    
 0.994
hsbp1
Heat shock factor binding protein 1a.
    
 
 0.966
ENSCVAP00000011422
CAP-ZIP_m domain-containing protein.
    
 0.956
LOC107087826
Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino.
    
   0.935
Fam21c
Uncharacterized protein.
    
 
 0.909
ndc80
NDC80 kinetochore complex component.
    
   0.889
BRK1
BRICK1 subunit of SCAR/WAVE actin nucleating complex.
    
 
 0.883
ENSCVAP00000011457
Uncharacterized protein.
    
 
 0.853
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.