Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107082017Solute carrier family 15 member 1a. (733 aa)    
Predicted Functional Partners:
CXorf21
Chromosome X open reading frame 21.
    
 0.741
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.599
LOC107097201
Si:dkey-32n7.4.
   
  
 0.594
slc39a13
Solute carrier family 39 member 13.
    
 
 0.575
bms1
BMS1 ribosome biogenesis factor.
      
 0.551
pola1
DNA polymerase.
      
 0.541
ace2
Angiotensin-converting enzyme.
   
  
 0.524
LOC107100709
Zgc:171592; Belongs to the peptidase S1 family.
   
  
 0.497
slc1a1
Amino acid transporter.
   
 
 0.496
LOC107096291
Uncharacterized protein.
      
 0.492
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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