STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095772Protein kinase domain-containing protein. (1007 aa)    
Predicted Functional Partners:
LOC107099240
Methyl CpG binding protein 2.
    
 
 0.761
fmr1
Fragile X mental retardation 1.
    
 
 0.605
RAI2
Retinoic acid induced 2.
      
 0.503
arx
Aristaless related homeobox a.
      
 0.500
prune1
Prune exopolyphosphatase.
      
 0.460
pcdh19
Protocadherin 19.
      
 0.456
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
      
 0.443
stxbp1
Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.423
ENSCVAP00000023951
PDZ domain-containing protein.
      
 0.423
ntng1
Netrin g1a.
      
 0.418
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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